Sada skriptů na transformaci geografických údajů o projektech EU fondů (ESIF) v ČR z obodbí 2014-2020. Cíl je rozpadnout každý projekt na obecní úroveň podle informací patrných buď ze zadaných geografických údajů, nebo z textových polí a informací o projektu a příjemci.
config.yml
_site.yml
.netlify/
Sofistikovanější vyyužití config.yml
viz dokumentaci a soubor .Rprofile
.
how-to-repeat.Rmd
onlinebuild-and-render.R
: celkový build v Rbuild-and-render.sh
: totéž v Bashi0N_*.R
: skripty, které načítají vstupní data a externí metadataNN_*.Rmd
: validace, transformace a export dat; též generuje webovou dokumentaci*.Rmd
další dokumentace a nástroje, které se též promítnou ve webové dokumentacidata-output
data-export
codebook.Rmd
a onlineFirst, install all the necessary R packages: run renv::restore()
(this only needs to be done once and only rerun if the renv.lock
file changes.)
Then:
data-input
, in a subdirectory set in the pth
variable in 01_load-data.Rmd
rmarkdown::render_site()
or run numbered RMarkdown scripts in orderor run build-and-render.R
to run both these steps.
To subsequently build the site afresh and deploy to Netlify
build-site-and-deploy.sh
; this requires the Netlify CLIdocs
folder to Netlify using other means.Environment reproducibility is maintained using renv
. This means that upon running R in the project folder, all the necessary packages will be installed in a local library by running renv::restore()
(in fact, installed in a cache from which they can be reused, and linked into the local project library where they take up no space.) Should this fail, you can run renv::deactivate()
and install the packages manually, though you might end up with different versions.
[1] "2021-01-30 21:34:33 CET"
─ Session info ───────────────────────────────────────────────────────────────
setting value
version R version 4.0.2 (2020-06-22)
os macOS Catalina 10.15.7
system x86_64, darwin17.0
ui X11
language (EN)
collate en_US.UTF-8
ctype en_US.UTF-8
tz Europe/Prague
date 2021-01-30
─ Packages ───────────────────────────────────────────────────────────────────
! package * version date lib source
P assertthat 0.2.1 2019-03-21 [?] CRAN (R 4.0.0)
P cli 2.2.0 2020-11-20 [?] CRAN (R 4.0.2)
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P config 0.3.1 2020-12-17 [?] CRAN (R 4.0.2)
P crayon 1.3.4 2017-09-16 [?] CRAN (R 4.0.0)
P desc 1.2.0 2018-05-01 [?] CRAN (R 4.0.0)
P details * 0.2.1 2020-01-12 [?] CRAN (R 4.0.0)
P digest 0.6.27 2020-10-24 [?] CRAN (R 4.0.2)
P evaluate 0.14 2019-05-28 [?] CRAN (R 4.0.0)
P fansi 0.4.1 2020-01-08 [?] CRAN (R 4.0.0)
P glue 1.4.2 2020-08-27 [?] CRAN (R 4.0.2)
P htmltools 0.5.0.9003 2021-01-09 [?] Github (rstudio/htmltools@d18bd8e)
P httr 1.4.2 2020-07-20 [?] CRAN (R 4.0.0)
P knitr 1.30 2020-09-22 [?] CRAN (R 4.0.2)
P magrittr 2.0.1 2020-11-17 [?] CRAN (R 4.0.2)
P png 0.1-7 2013-12-03 [?] CRAN (R 4.0.0)
P R6 2.5.0 2020-10-28 [?] CRAN (R 4.0.2)
P renv 0.12.5 2021-01-09 [?] CRAN (R 4.0.2)
P rlang 0.4.10 2020-12-30 [?] CRAN (R 4.0.2)
P rmarkdown 2.6 2020-12-14 [?] CRAN (R 4.0.2)
P rprojroot 2.0.2 2020-11-15 [?] CRAN (R 4.0.2)
P sessioninfo 1.1.1 2018-11-05 [?] CRAN (R 4.0.0)
P stringi 1.5.3 2020-09-09 [?] CRAN (R 4.0.2)
P stringr 1.4.0 2019-02-10 [?] CRAN (R 4.0.0)
P withr 2.3.0 2020-09-22 [?] CRAN (R 4.0.2)
P xfun 0.20 2021-01-06 [?] CRAN (R 4.0.2)
P xml2 1.3.2 2020-04-23 [?] CRAN (R 4.0.0)
P yaml 2.2.1 2020-02-01 [?] CRAN (R 4.0.0)
[1] /Users/petr/cwork/mmr-esif-clean/renv/library/R-4.0/x86_64-apple-darwin17.0
[2] /private/var/folders/c8/pj33jytj233g8vr0tw4b2h7m0000gn/T/RtmpgBHozX/renv-system-library
P ── Loaded and on-disk path mismatch.
Local: master /Users/petr/cwork/mmr-esif-clean
Remote: master @ origin (git@github.com:petrbouchal/mmr-esif-clean.git)
Head: [a3e3041] 2021-01-30: record config.yml in reproducibility report
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[1] "curl"
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[1] "api.github.com"
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[1] "master"
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[1] "CRAN"
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[1] "api.github.com"
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[1] "master"
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[1] "CRAN"
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[1] "CRAN"
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[1] "Repository"
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[1] "CRAN"
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[1] "CRAN"
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[1] "CRAN"
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[1] "Repository"
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[1] "CRAN"
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[1] "Repository"
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[1] "CRAN"
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[1] "Repository"
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[1] "CRAN"
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[1] "CRAN"
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[1] "api.github.com"
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[1] "clauswilke"
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[1] "ggtext"
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[1] "master"
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[1] "git2r"
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[1] "Repository"
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[1] "Repository"
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[1] "sass"
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[1] "0.2.0"
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[1] "scatterplot3d"
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[1] "statnipokladna"
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[1] "0.6.0.9000"
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[1] "GitHub"
$Packages$statnipokladna$RemoteType
[1] "github"
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[1] "api.github.com"
$Packages$statnipokladna$RemoteUsername
[1] "petrbouchal"
$Packages$statnipokladna$RemoteRepo
[1] "statnipokladna"
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[1] "master"
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[1] "tictoc"
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[1] "1.0"
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[1] "Repository"
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[1] "CRAN"
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[1] "f8cc5adf4671b013434bbe127f35b28c"
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[1] "tidyr"
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[1] "Repository"
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[1] "tidyselect"
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[1] "Repository"
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[1] "6ea435c354e8448819627cf686f66e0a"
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[1] "tidyverse"
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[1] "bd51be662f359fa99021f3d51e911490"
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[1] "tinytex"
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[1] "Repository"
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[1] "ff73961a77fba606fbf944dc3468e5b9"
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[1] "tweenr"
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[1] "1.0.1"
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[1] "Repository"
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[1] "CRAN"
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[1] "fc77eb5297507cccfa3349a606061030"
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[1] "units"
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[1] "0.6-6"
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[1] "Repository"
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[1] "687aa5dfc4ec01ad4da86862a7e6a05b"
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[1] "2.0.0"
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[1] "Repository"
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[1] "133099afbac51dc52948b89b387a9734"
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[1] "1.1.4"
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[1] "Repository"
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[1] "CRAN"
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[1] "4a5081acfb7b81a572e4384a7aaf2af1"
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[1] "uuid"
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[1] "0.1-4"
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[1] "Repository"
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[1] "CRAN"
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[1] "e4169eb989a5d03ccb6b628cad1b1b50"
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[1] "vctrs"
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[1] "0.3.6"
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[1] "Repository"
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[1] "CRAN"
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[1] "5cf1957f93076c19fdc81d01409d240b"
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[1] "viridis"
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[1] "0.5.1"
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[1] "Repository"
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[1] "CRAN"
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[1] "Repository"
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[1] "CRAN"
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[1] "ce4f6271baa94776db692f1cb2055bee"
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[1] "visdat"
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[1] "Repository"
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[1] "Repository"
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[1] "CRAN"
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[1] "181d1a31b1ba2009ef20926f2ee0570c"
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[1] "whisker"
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[1] "0.4"
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[1] "Repository"
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[1] "CRAN"
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[1] "ca970b96d894e90397ed20637a0c1bbe"
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[1] "whoami"
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[1] "Repository"
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[1] "CRAN"
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[1] "ef0f4d9b8f2cc2ebeccae1d725b8a023"
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[1] "withr"
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[1] "2.3.0"
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[1] "Repository"
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[1] "CRAN"
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[1] "7307d79f58d1885b38c4f4f1a8cb19dd"
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[1] "writexl"
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[1] "1.3.1"
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[1] "Repository"
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[1] "CRAN"
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[1] "230396d86a3710b0ec8f50bd3c81483e"
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[1] "xfun"
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[1] "0.20"
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[1] "Repository"
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[1] "CRAN"
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[1] "d7222684dc02327871e3b1da0aba7089"
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[1] "xml2"
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[1] "1.3.2"
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[1] "Repository"
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[1] "CRAN"
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[1] "d4d71a75dd3ea9eb5fa28cc21f9585e2"
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[1] "xopen"
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[1] "1.0.0"
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[1] "Repository"
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[1] "CRAN"
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[1] "6c85f015dee9cc7710ddd20f86881f58"
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[1] "yaml"
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[1] "2.2.1"
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[1] "Repository"
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[1] "CRAN"
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[1] "2826c5d9efb0a88f657c7a679c7106db"
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[1] "zip"
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[1] "2.1.1"
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[1] "Repository"
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[1] "CRAN"
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[1] "3bc8405c637d988801ec5ea88372d0c2"
attr(,"class")
[1] "renv_lockfile"
default:
input_dir: "data-input/sestavy-20210119"
input_chu_xlsx: "data-input/CHKONP.xlsx"
input_resolved_xlsx: "data-manual/prj_nonhier-resolved.xlsx"
arrow_output_dir: "data-output/dtl-all-arrow"
arrow_partitioning: ["obec_puvod", "op_id", "chunk", "rozpad_typ"]
excel_output_dir: "data-export/excel-all-chunked"
export_excel: true
$input_dir
[1] "data-input/sestavy-20210119"
$input_chu_xlsx
[1] "data-input/CHKONP.xlsx"
$input_resolved_xlsx
[1] "data-manual/prj_nonhier-resolved.xlsx"
$arrow_output_dir
[1] "data-output/dtl-all-arrow"
$arrow_partitioning
[1] "obec_puvod" "op_id" "chunk" "rozpad_typ"
$excel_output_dir
[1] "data-export/excel-all-chunked"
$export_excel
[1] TRUE
attr(,"config")
[1] "default"
attr(,"file")
[1] "/Users/petr/cwork/mmr-esif-clean/config.yml"